PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_D3C383CF5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 341aa    MW: 37363.4 Da    PI: 7.4695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_D3C383CF5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.1e-28191247259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+ k++e prsYY+Ct   Cpvkk vers  d+ + eitY+g+H+h+
  Traes_5BL_D3C383CF5.1 191 KDGYNWRKYGQKQLKDAESPRSYYKCTRDACPVKKIVERSF-DGCIKEITYKGRHTHP 247
                            8****************************************.***************8 PP

2WRKY40.65.1e-13314337124
                            ---SS-EEEEEEE--TT-SS-EEE CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                            ldDgy+WrKYGqK+vkg++ prsY
  Traes_5BL_D3C383CF5.1 314 LDDGYRWRKYGQKVVKGNPRPRSY 337
                            59********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-25188249IPR003657WRKY domain
SuperFamilySSF1182905.23E-23189249IPR003657WRKY domain
SMARTSM007746.1E-30190248IPR003657WRKY domain
PfamPF031061.5E-21191247IPR003657WRKY domain
PROSITE profilePS5081121.184192249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-13299337IPR003657WRKY domain
SuperFamilySSF1182901.44E-10307337IPR003657WRKY domain
PROSITE profilePS5081116.65309337IPR003657WRKY domain
SMARTSM007740.0019314341IPR003657WRKY domain
PfamPF031062.5E-8315337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADRRGDGMR QQPPYSSGHQ ERVFDGGGGS SGGPAFGNDY DPGSSYMSLL GSGVNPQQLL  60
PAPPAWAVEE VAPPTINLTP QFSMANYVPT SSYQQQQHQT AASFVAPLAA NLHPYQSSSS  120
SYFQADPLPQ WPPRAMAPSP SSSLLPRNFT LHQTPAYPHH HEQQMHMQLL RAAALGGPHA  180
APAPPIEQPA KDGYNWRKYG QKQLKDAESP RSYYKCTRDA CPVKKIVERS FDGCIKEITY  240
KGRHTHPRPP EPRRAGAEDV AAPGSAHQED ELSDDEDDGE EGHDIGSGAG GPAGQRVVRK  300
HKIILQTPSE VDLLDDGYRW RKYGQKVVKG NPRPRSYISG W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-141902501475WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638030.0AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229481.21e-108PREDICTED: probable WRKY transcription factor 3
TrEMBLW5FII90.0W5FII9_WHEAT; Uncharacterized protein
STRINGBRADI1G07970.11e-108(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-39WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]